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  1. puma::Clust.exampleE
    The example data of the mean gene expression levels
    csv| json| rda| rds
    matrix|700 x 20
  2. puma::Clust.exampleStd
    The example data of the standard deviation for gene expression levels
    csv| json| rda| rds
    matrix|700 x 20
  3. puma::Clustii.exampleE
    The example data of the mean gene expression levels
    csv| xlsx| json| ndjson| rda| rds
    data.frame|600 x 80
  4. puma::Clustii.exampleStd
    The example data of the standard deviation for gene expression levels
    csv| xlsx| json| ndjson| rda| rds
    data.frame|600 x 80
  5. puma::eset_mmgmos
    An example ExpressionSet created from the Dilution data with mmgmos
    rda| rds
    exprReslt
  6. puma::exampleE
    The example data of the mean gene expression levels
    csv| json| rda| rds
    matrix|200 x 6
  7. puma::exampleStd
    The example data of the standard deviation for gene expression levels
    csv| json| rda| rds
    matrix|200 x 6
  8. puma::hgu95aphis
    Estimated parameters of the distribution of phi
    json| rda| rds
    numeric
  9. pumadata::affybatch.estrogen
    The data from the estrogen package as an AffyBatch object
    rda| rds
    AffyBatch
  10. pumadata::eset_estrogen_comb
    The data from the estrogen package processed using the multi-mgMOS and PUMAcomb algorithms
    rda| rds
    ExpressionSet
  11. pumadata::eset_estrogen_mmgmos
    The data from the estrogen package processed using the multi-mgMOS algorithm
    rda| rds
    exprReslt
  12. pumadata::eset_estrogen_pmmmgmos
    The data from the estrogen package processed using the multi-mgMOS use PM intensities only
    rda| rds
    exprReslt
  13. pumadata::eset_estrogen_rma
    The data from the estrogen package processed using the RMA algorithm
    rda| rds
    ExpressionSet
  14. pumadata::HTA_Location
    The coordinates of probes and the mapped PM probes for hta2.0 chips
    csv| json| rda| rds
    matrix|1 x 0
  15. pumadata::HTA_probes_transcripts
    The number of probes and the number of transcripts mapped to each gene for hta2.0 chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33413 x 2
  16. pumadata::HTA_transcript_name
    The names of transcripts mapped to each gene for hta2.0 chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|225447 x 1
  17. pumadata::HTA_transcript_NO
    The coordinates of probes and the mapped transcripts for hta2.0 chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20628686 x 3
  18. pumadata::Human_Location
    The coordinates of probes and the mapped PM for human exon chips
    csv| json| rda| rds
    matrix|1 x 0
  19. pumadata::Human_probes_transcripts
    The number of probes and the number of transcripts mapped to each gene for human exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40174 x 2
  20. pumadata::Human_transcript_name
    The names of transcripts mapped to each gene for human exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|121741 x 1
  21. pumadata::Human_transcript_NO
    The coordinates of probes and the mapped transcripts for human exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4598850 x 3
  22. pumadata::Mouse_Location
    The coordinates of probes and the mapped PM for Mouse exon chips
    csv| json| rda| rds
    matrix|1 x 0
  23. pumadata::Mouse_probes_transcripts
    The number of probes and the number of transcripts mapped to each gene for mouse exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27719 x 2
  24. pumadata::Mouse_transcript_name
    The names of transcripts mapped to each gene for mouse exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|75751 x 1
  25. pumadata::Mouse_transcript_NO
    The coordinates of probes and the mapped transcripts mapped for mouse exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2928488 x 3
  26. pumadata::oligo.estrogen
    The data from the estrogen package as an ExpressionFeatureSet object
    rda| rds
    ExpressionFeatureSet
  27. pumadata::pumapca_estrogen
    The data from the estrogen package processed using the pumaPCA algorithm
    rda| rds
    pumaPCARes
  28. pumadata::Rat_Location
    The coordinates of probes and the mapped PM for Rat exon chips
    csv| json| rda| rds
    matrix|1 x 0
  29. pumadata::Rat_probes_transcripts
    The number of probes and the number of transcripts mapped to each gene for rat exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23585 x 2
  30. pumadata::Rat_transcript_name
    The names of transcripts mapped to each gene for rat exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33485 x 1
  31. pumadata::Rat_transcript_NO
    The coordinates of probes and the mapped transcripts for rat exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1491570 x 3